tom@whunk tmp.yDsm6IreKo $ pyenv shell 3.7 tom@whunk tmp.yDsm6IreKo (py:3.7.17) $ venv Creating .venv/ Requirement already satisfied: pip in ./.venv/lib/python3.7/site-packages (23.0.1) Collecting pip Using cached pip-23.2.1-py3-none-any.whl (2.1 MB) Requirement already satisfied: setuptools in ./.venv/lib/python3.7/site-packages (47.1.0) Collecting setuptools Using cached setuptools-68.0.0-py3-none-any.whl (804 kB) Collecting wheel Using cached wheel-0.41.2-py3-none-any.whl (64 kB) Installing collected packages: wheel, setuptools, pip Attempting uninstall: setuptools Found existing installation: setuptools 47.1.0 Uninstalling setuptools-47.1.0: Successfully uninstalled setuptools-47.1.0 Attempting uninstall: pip Found existing installation: pip 23.0.1 Uninstalling pip-23.0.1: Successfully uninstalled pip-23.0.1 Successfully installed pip-23.2.1 setuptools-68.0.0 wheel-0.41.2 tom@whunk tmp.yDsm6IreKo (v) (py:3.7.17) $ pip install --upgrade nextstrain-cli Collecting nextstrain-cli Obtaining dependency information for nextstrain-cli from https://files.pythonhosted.org/packages/6e/63/81f1594d1f47932384b2b58dd34f5f4cbcfea84a10d5c3ce547a116cbf99/nextstrain_cli-7.2.0-py3-none-any.whl.metadata Downloading nextstrain_cli-7.2.0-py3-none-any.whl.metadata (3.9 kB) Collecting docutils (from nextstrain-cli) Obtaining dependency information for docutils from https://files.pythonhosted.org/packages/26/87/f238c0670b94533ac0353a4e2a1a771a0cc73277b88bff23d3ae35a256c1/docutils-0.20.1-py3-none-any.whl.metadata Using cached docutils-0.20.1-py3-none-any.whl.metadata (2.8 kB) Collecting fasteners (from nextstrain-cli) Using cached fasteners-0.18-py3-none-any.whl (18 kB) Collecting packaging (from nextstrain-cli) Using cached packaging-23.1-py3-none-any.whl (48 kB) Collecting pyjwt[crypto]>=2.0.0 (from nextstrain-cli) Obtaining dependency information for pyjwt[crypto]>=2.0.0 from https://files.pythonhosted.org/packages/2b/4f/e04a8067c7c96c364cef7ef73906504e2f40d690811c021e1a1901473a19/PyJWT-2.8.0-py3-none-any.whl.metadata Using cached PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB) Collecting pyparsing>=3.0.0 (from nextstrain-cli) Obtaining dependency information for pyparsing>=3.0.0 from https://files.pythonhosted.org/packages/39/92/8486ede85fcc088f1b3dba4ce92dd29d126fd96b0008ea213167940a2475/pyparsing-3.1.1-py3-none-any.whl.metadata Downloading pyparsing-3.1.1-py3-none-any.whl.metadata (5.1 kB) Collecting requests (from nextstrain-cli) Obtaining dependency information for requests from https://files.pythonhosted.org/packages/70/8e/0e2d847013cb52cd35b38c009bb167a1a26b2ce6cd6965bf26b47bc0bf44/requests-2.31.0-py3-none-any.whl.metadata Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) Collecting typing-extensions>=3.7.4 (from nextstrain-cli) Obtaining dependency information for typing-extensions>=3.7.4 from https://files.pythonhosted.org/packages/ec/6b/63cc3df74987c36fe26157ee12e09e8f9db4de771e0f3404263117e75b95/typing_extensions-4.7.1-py3-none-any.whl.metadata Using cached typing_extensions-4.7.1-py3-none-any.whl.metadata (3.1 kB) Collecting wcmatch>=6.0 (from nextstrain-cli) Using cached wcmatch-8.4.1-py3-none-any.whl (39 kB) Collecting wrapt (from nextstrain-cli) Using cached wrapt-1.15.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (75 kB) Collecting fsspec (from nextstrain-cli) Using cached fsspec-2023.1.0-py3-none-any.whl (143 kB) Collecting s3fs[boto3]>=2021.04.0 (from nextstrain-cli) Using cached s3fs-2023.1.0-py3-none-any.whl (27 kB) Collecting importlib-resources>=5.3.0 (from nextstrain-cli) Using cached importlib_resources-5.12.0-py3-none-any.whl (36 kB) Collecting importlib-metadata (from nextstrain-cli) Obtaining dependency information for importlib-metadata from https://files.pythonhosted.org/packages/ff/94/64287b38c7de4c90683630338cf28f129decbba0a44f0c6db35a873c73c4/importlib_metadata-6.7.0-py3-none-any.whl.metadata Using cached importlib_metadata-6.7.0-py3-none-any.whl.metadata (4.9 kB) Collecting zipp>=3.1.0 (from importlib-resources>=5.3.0->nextstrain-cli) Using cached zipp-3.15.0-py3-none-any.whl (6.8 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.0.0->nextstrain-cli) Obtaining dependency information for cryptography>=3.4.0 from https://files.pythonhosted.org/packages/21/74/a7ebb5bcf733b1626e4778941e505792d7f655e799ff3bdbd9a176516ee2/cryptography-41.0.3-cp37-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading cryptography-41.0.3-cp37-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.2 kB) Collecting aiobotocore~=2.4.2 (from s3fs[boto3]>=2021.04.0->nextstrain-cli) Using cached aiobotocore-2.4.2-py3-none-any.whl (66 kB) Collecting aiohttp!=4.0.0a0,!=4.0.0a1 (from s3fs[boto3]>=2021.04.0->nextstrain-cli) Obtaining dependency information for aiohttp!=4.0.0a0,!=4.0.0a1 from https://files.pythonhosted.org/packages/7f/02/4bc6d32b76499d8e326f816ddc7f94e4b06004258fd0a02d7ec3cb1aaf4f/aiohttp-3.8.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading aiohttp-3.8.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.7 kB) Collecting bracex>=2.1.1 (from wcmatch>=6.0->nextstrain-cli) Using cached bracex-2.3.post1-py3-none-any.whl (12 kB) Collecting charset-normalizer<4,>=2 (from requests->nextstrain-cli) Obtaining dependency information for charset-normalizer<4,>=2 from https://files.pythonhosted.org/packages/89/f5/88e9dd454756fea555198ddbe6fa40d6408ec4f10ad4f0a911e0b7e471e4/charset_normalizer-3.2.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading charset_normalizer-3.2.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (31 kB) Collecting idna<4,>=2.5 (from requests->nextstrain-cli) Using cached idna-3.4-py3-none-any.whl (61 kB) Collecting urllib3<3,>=1.21.1 (from requests->nextstrain-cli) Obtaining dependency information for urllib3<3,>=1.21.1 from https://files.pythonhosted.org/packages/9b/81/62fd61001fa4b9d0df6e31d47ff49cfa9de4af03adecf339c7bc30656b37/urllib3-2.0.4-py3-none-any.whl.metadata Using cached urllib3-2.0.4-py3-none-any.whl.metadata (6.6 kB) Collecting certifi>=2017.4.17 (from requests->nextstrain-cli) Obtaining dependency information for certifi>=2017.4.17 from https://files.pythonhosted.org/packages/4c/dd/2234eab22353ffc7d94e8d13177aaa050113286e93e7b40eae01fbf7c3d9/certifi-2023.7.22-py3-none-any.whl.metadata Using cached certifi-2023.7.22-py3-none-any.whl.metadata (2.2 kB) Collecting botocore<1.27.60,>=1.27.59 (from aiobotocore~=2.4.2->s3fs[boto3]>=2021.04.0->nextstrain-cli) Using cached botocore-1.27.59-py3-none-any.whl (9.1 MB) Collecting aioitertools>=0.5.1 (from aiobotocore~=2.4.2->s3fs[boto3]>=2021.04.0->nextstrain-cli) Using cached aioitertools-0.11.0-py3-none-any.whl (23 kB) Collecting boto3<1.24.60,>=1.24.59 (from aiobotocore~=2.4.2->s3fs[boto3]>=2021.04.0->nextstrain-cli) Using cached boto3-1.24.59-py3-none-any.whl (132 kB) Collecting attrs>=17.3.0 (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs[boto3]>=2021.04.0->nextstrain-cli) Using cached attrs-23.1.0-py3-none-any.whl (61 kB) Collecting multidict<7.0,>=4.5 (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs[boto3]>=2021.04.0->nextstrain-cli) Downloading multidict-6.0.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (94 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 94.8/94.8 kB 2.7 MB/s eta 0:00:00 Collecting async-timeout<5.0,>=4.0.0a3 (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs[boto3]>=2021.04.0->nextstrain-cli) Obtaining dependency information for async-timeout<5.0,>=4.0.0a3 from https://files.pythonhosted.org/packages/a7/fa/e01228c2938de91d47b307831c62ab9e4001e747789d0b05baf779a6488c/async_timeout-4.0.3-py3-none-any.whl.metadata Downloading async_timeout-4.0.3-py3-none-any.whl.metadata (4.2 kB) Collecting yarl<2.0,>=1.0 (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs[boto3]>=2021.04.0->nextstrain-cli) Downloading yarl-1.9.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (236 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 236.2/236.2 kB 6.9 MB/s eta 0:00:00 Collecting frozenlist>=1.1.1 (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs[boto3]>=2021.04.0->nextstrain-cli) Downloading frozenlist-1.3.3-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (148 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 148.0/148.0 kB 8.2 MB/s eta 0:00:00 Collecting aiosignal>=1.1.2 (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs[boto3]>=2021.04.0->nextstrain-cli) Using cached aiosignal-1.3.1-py3-none-any.whl (7.6 kB) Collecting asynctest==0.13.0 (from aiohttp!=4.0.0a0,!=4.0.0a1->s3fs[boto3]>=2021.04.0->nextstrain-cli) Using cached asynctest-0.13.0-py3-none-any.whl (26 kB) Collecting cffi>=1.12 (from cryptography>=3.4.0->pyjwt[crypto]>=2.0.0->nextstrain-cli) Using cached cffi-1.15.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (427 kB) Collecting jmespath<2.0.0,>=0.7.1 (from boto3<1.24.60,>=1.24.59->aiobotocore~=2.4.2->s3fs[boto3]>=2021.04.0->nextstrain-cli) Using cached jmespath-1.0.1-py3-none-any.whl (20 kB) Collecting s3transfer<0.7.0,>=0.6.0 (from boto3<1.24.60,>=1.24.59->aiobotocore~=2.4.2->s3fs[boto3]>=2021.04.0->nextstrain-cli) Obtaining dependency information for s3transfer<0.7.0,>=0.6.0 from https://files.pythonhosted.org/packages/d9/17/a3b666f5ef9543cfd3c661d39d1e193abb9649d0cfbbfee3cf3b51d5af02/s3transfer-0.6.2-py3-none-any.whl.metadata Downloading s3transfer-0.6.2-py3-none-any.whl.metadata (1.8 kB) Collecting python-dateutil<3.0.0,>=2.1 (from botocore<1.27.60,>=1.27.59->aiobotocore~=2.4.2->s3fs[boto3]>=2021.04.0->nextstrain-cli) Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) Collecting urllib3<3,>=1.21.1 (from requests->nextstrain-cli) Obtaining dependency information for urllib3<3,>=1.21.1 from https://files.pythonhosted.org/packages/c5/05/c214b32d21c0b465506f95c4f28ccbcba15022e000b043b72b3df7728471/urllib3-1.26.16-py2.py3-none-any.whl.metadata Using cached urllib3-1.26.16-py2.py3-none-any.whl.metadata (48 kB) Collecting pycparser (from cffi>=1.12->cryptography>=3.4.0->pyjwt[crypto]>=2.0.0->nextstrain-cli) Using cached pycparser-2.21-py2.py3-none-any.whl (118 kB) Collecting six>=1.5 (from python-dateutil<3.0.0,>=2.1->botocore<1.27.60,>=1.27.59->aiobotocore~=2.4.2->s3fs[boto3]>=2021.04.0->nextstrain-cli) Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) Downloading nextstrain_cli-7.2.0-py3-none-any.whl (152 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 152.3/152.3 kB 8.0 MB/s eta 0:00:00 Downloading pyparsing-3.1.1-py3-none-any.whl (103 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 103.1/103.1 kB 9.9 MB/s eta 0:00:00 Using cached typing_extensions-4.7.1-py3-none-any.whl (33 kB) Using cached docutils-0.20.1-py3-none-any.whl (572 kB) Downloading importlib_metadata-6.7.0-py3-none-any.whl (22 kB) Using cached requests-2.31.0-py3-none-any.whl (62 kB) Downloading aiohttp-3.8.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (976 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 976.5/976.5 kB 9.7 MB/s eta 0:00:00 Using cached certifi-2023.7.22-py3-none-any.whl (158 kB) Downloading charset_normalizer-3.2.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (175 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 175.8/175.8 kB 17.9 MB/s eta 0:00:00 Downloading cryptography-41.0.3-cp37-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.3/4.3 MB 25.9 MB/s eta 0:00:00 Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB) Downloading async_timeout-4.0.3-py3-none-any.whl (5.7 kB) Using cached urllib3-1.26.16-py2.py3-none-any.whl (143 kB) Downloading s3transfer-0.6.2-py3-none-any.whl (79 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 79.8/79.8 kB 6.0 MB/s eta 0:00:00 Installing collected packages: zipp, wrapt, urllib3, typing-extensions, six, pyparsing, pycparser, packaging, multidict, jmespath, idna, fsspec, frozenlist, fasteners, docutils, charset-normalizer, certifi, bracex, asynctest, yarl, wcmatch, requests, python-dateutil, pyjwt, importlib-resources, importlib-metadata, cffi, async-timeout, aiosignal, aioitertools, cryptography, botocore, attrs, s3transfer, aiohttp, boto3, aiobotocore, s3fs, nextstrain-cli Successfully installed aiobotocore-2.4.2 aiohttp-3.8.5 aioitertools-0.11.0 aiosignal-1.3.1 async-timeout-4.0.3 asynctest-0.13.0 attrs-23.1.0 boto3-1.24.59 botocore-1.27.59 bracex-2.3.post1 certifi-2023.7.22 cffi-1.15.1 charset-normalizer-3.2.0 cryptography-41.0.3 docutils-0.20.1 fasteners-0.18 frozenlist-1.3.3 fsspec-2023.1.0 idna-3.4 importlib-metadata-6.7.0 importlib-resources-5.12.0 jmespath-1.0.1 multidict-6.0.4 nextstrain-cli-7.2.0 packaging-23.1 pycparser-2.21 pyjwt-2.8.0 pyparsing-3.1.1 python-dateutil-2.8.2 requests-2.31.0 s3fs-2023.1.0 s3transfer-0.6.2 six-1.16.0 typing-extensions-4.7.1 urllib3-1.26.16 wcmatch-8.4.1 wrapt-1.15.0 yarl-1.9.2 zipp-3.15.0 tom@whunk tmp.yDsm6IreKo (v) (py:3.7.17) $ NEXTSTRAIN_HOME="$PWD" nextstrain version nextstrain.cli 7.2.0 tom@whunk tmp.yDsm6IreKo (v) (py:3.7.17) $ NEXTSTRAIN_HOME="$PWD" nextstrain setup --set-default conda Setting up conda… Requesting Micromamba from https://api.anaconda.org/download/conda-forge/micromamba/1.1.0/linux-64/micromamba-1.1.0-1.tar.bz2… Downloading and extracting Micromamba to /tmp/tmp.yDsm6IreKo/runtimes/conda/micromamba… Installing Conda packages into /tmp/tmp.yDsm6IreKo/runtimes/conda/env… - nextstrain-base __ __ ______ ___ ____ _____ ___ / /_ ____ _ / / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/ / /_/ / / / / / / /_/ / / / / / / /_/ / /_/ / / .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/ /_/ nextstrain/noarch 130.0 B @ 424.0 B/s 0.3s nextstrain/linux-64 41.6kB @ 67.5kB/s 0.6s bioconda/linux-64 5.1MB @ 3.3MB/s 1.6s bioconda/noarch 4.7MB @ 2.4MB/s 1.7s conda-forge/noarch 13.9MB @ 3.7MB/s 3.9s conda-forge/linux-64 33.9MB @ 3.6MB/s 9.9s Transaction Prefix: /tmp/tmp.yDsm6IreKo/runtimes/conda/env Updating specs: - nextstrain-base Package Version Build Channel Size ────────────────────────────────────────────────────────────────────────────────────────────────────────── Install: ────────────────────────────────────────────────────────────────────────────────────────────────────────── + _libgcc_mutex 0.1 conda_forge conda-forge/linux-64 3kB + _openmp_mutex 4.5 2_gnu conda-forge/linux-64 24kB + absl-py 1.4.0 pyhd8ed1ab_0 conda-forge/noarch 102kB + aiobotocore 2.5.2 pyhd8ed1ab_0 conda-forge/noarch 63kB + aioeasywebdav 2.4.0 pyha770c72_0 conda-forge/noarch 13kB + aiohttp 3.8.4 py310h2372a71_1 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bioconda/linux-64 483kB + veracitools 0.1.3 py_0 conda-forge/noarch 6kB + wcmatch 8.3 pyhd8ed1ab_0 conda-forge/noarch 35kB + wcwidth 0.2.6 pyhd8ed1ab_0 conda-forge/noarch 29kB + wget 1.20.3 ha35d2d1_1 conda-forge/linux-64 835kB + wheel 0.40.0 pyhd8ed1ab_1 conda-forge/noarch 57kB + wrapt 1.15.0 py310h1fa729e_0 conda-forge/linux-64 54kB + xopen 1.7.0 py310hff52083_2 conda-forge/linux-64 31kB + xorg-libxau 1.0.11 hd590300_0 conda-forge/linux-64 14kB + xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge/linux-64 19kB + xz 5.2.6 h166bdaf_0 conda-forge/linux-64 418kB + yaml 0.2.5 h7f98852_2 conda-forge/linux-64 89kB + yaml-cpp 0.7.0 h27087fc_2 conda-forge/linux-64 220kB + yarl 1.9.2 py310h2372a71_0 conda-forge/linux-64 97kB + yte 1.5.1 pyha770c72_2 conda-forge/noarch 14kB + zip 3.0 h7f98852_1 conda-forge/linux-64 113kB + zipp 3.16.2 pyhd8ed1ab_0 conda-forge/noarch 19kB + zlib 1.2.13 hd590300_5 conda-forge/linux-64 93kB + zstandard 0.19.0 py310h1275a96_2 conda-forge/linux-64 394kB + zstd 1.5.2 hfc55251_7 conda-forge/linux-64 431kB Summary: Install: 310 packages Total download: 435MB ────────────────────────────────────────────────────────────────────────────────────────────────────────── Transaction starting ld_impl_linux-64 704.7kB @ 3.7MB/s 0.2s _libgcc_mutex 2.6kB @ 13.3kB/s 0.2s pbzip2 117.2kB @ 562.5kB/s 0.2s ca-certificates 148.4kB @ 684.9kB/s 0.2s xorg-libxau 14.5kB @ 62.8kB/s 0.0s libgfortran5 1.4MB @ 6.0MB/s 0.2s _openmp_mutex 23.6kB @ 98.4kB/s 0.1s libwebp-base 399.9kB @ 1.6MB/s 0.0s ncurses 881.0kB @ 3.3MB/s 0.1s libbrotlicommon 71.1kB @ 263.4kB/s 0.0s libjpeg-turbo 490.5kB @ 1.8MB/s 0.0s libabseil 1.1MB @ 3.7MB/s 0.1s yaml-cpp 219.8kB @ 732.2kB/s 0.0s lzo 321.1kB @ 1.0MB/s 0.0s xorg-libxdmcp 19.1kB @ 59.9kB/s 0.1s oniguruma 440.0kB @ 1.3MB/s 0.1s keyutils 117.8kB @ 348.5kB/s 0.0s libnsl 31.2kB @ 89.6kB/s 0.1s gzip 95.1kB @ 264.3kB/s 0.0s libiconv 1.5MB @ 3.9MB/s 0.1s reproc-cpp 21.7kB @ 58.3kB/s 0.0s libsolv 467.1kB @ 1.2MB/s 0.0s bzip2 495.7kB @ 1.2MB/s 0.1s libssh2 271.1kB @ 663.5kB/s 0.1s libblas 14.5kB @ 34.7kB/s 0.0s libbrotlienc 265.2kB @ 622.3kB/s 0.1s libxml2 704.1kB @ 1.6MB/s 0.1s mpfr 631.0kB @ 1.4MB/s 0.1s gdbm 194.8kB @ 425.2kB/s 0.0s glpk 1.0MB @ 2.3MB/s 0.1s pigz 89.5kB @ 190.4kB/s 0.1s liblapack 14.4kB @ 28.4kB/s 0.1s liblapacke 14.4kB @ 28.2kB/s 0.1s brotli 20.1kB @ 39.3kB/s 0.0s libhwloc 2.6MB @ 4.7MB/s 0.1s libarchive 843.9kB @ 1.5MB/s 0.1s coin-or-utils 687.3kB @ 1.2MB/s 0.1s tzdata 117.6kB @ 205.2kB/s 0.0s coincbc 12.0kB @ 20.4kB/s 0.0s suitesparse 2.5MB @ 4.2MB/s 0.1s curl 89.5kB @ 148.8kB/s 0.1s fasttree 266.3kB @ 442.4kB/s 0.0s wheel 57.1kB @ 90.1kB/s 0.0s zipp 18.8kB @ 29.6kB/s 0.0s typing_extensions 36.3kB @ 55.9kB/s 0.1s python-fastjsonschema 225.8kB @ 338.0kB/s 0.0s pyparsing 88.9kB @ 130.7kB/s 0.0s pluggy 21.5kB @ 31.3kB/s 0.0s dpath 21.0kB @ 30.2kB/s 0.0s boltons 302.8kB @ 418.8kB/s 0.0s certifi 152.4kB @ 208.1kB/s 0.1s uritemplate 12.3kB @ 16.7kB/s 0.0s throttler 11.3kB @ 14.7kB/s 0.0s smmap 22.8kB @ 29.5kB/s 0.0s six 14.3kB @ 18.4kB/s 0.0s plac 23.4kB @ 29.2kB/s 0.0s munkres 12.5kB @ 15.4kB/s 0.0s mdurl 13.7kB @ 16.7kB/s 0.0s fastprogress 17.1kB @ 20.4kB/s 0.0s fsspec 83.0kB @ 97.0kB/s 0.1s connection_pool 8.3kB @ 9.6kB/s 0.1s backrefs 203.9kB @ 228.7kB/s 0.1s aioitertools 22.5kB @ 24.5kB/s 0.0s importlib_resources 27.7kB @ 29.9kB/s 0.1s pyu2f 31.9kB @ 34.4kB/s 0.0s tsv-utils 11.5MB @ 12.1MB/s 0.4s isodate 29.0kB @ 30.2kB/s 0.0s pyasn1-modules 61.3kB @ 63.1kB/s 0.0s stone 149.0kB @ 153.2kB/s 0.0s setuptools-scm 39.1kB @ 39.1kB/s 0.0s wcwidth 29.1kB @ 29.1kB/s 0.0s veracitools 6.1kB @ 6.1kB/s 0.0s rich 183.7kB @ 181.5kB/s 0.0s attmap 13.6kB @ 12.8kB/s 0.1s pango_aliasor 11.1kB @ 10.5kB/s 0.1s protobuf 323.5kB @ 305.3kB/s 0.0s multidict 52.8kB @ 48.5kB/s 0.0s markupsafe 23.9kB @ 21.9kB/s 0.0s libmambapy 290.6kB @ 261.5kB/s 0.1s pyyaml 181.8kB @ 161.6kB/s 0.0s pycosat 110.6kB @ 98.3kB/s 0.0s cffi 237.0kB @ 206.0kB/s 0.0s contourpy 220.9kB @ 191.9kB/s 0.0s auspice 37.7MB @ 31.9MB/s 0.6s python-irodsclient 155.2kB @ 131.0kB/s 0.2s pynacl 1.4MB @ 1.2MB/s 0.1s cryptography 1.9MB @ 1.6MB/s 0.1s googleapis-common-protos 120.2kB @ 97.9kB/s 0.0s biopython 2.8MB @ 2.2MB/s 0.1s aiosignal 12.7kB @ 10.2kB/s 0.1s pyopenssl 129.0kB @ 102.4kB/s 0.0s peppy 32.5kB @ 25.7kB/s 0.0s slacker 15.6kB @ 12.1kB/s 0.0s pysftp 15.5kB @ 12.0kB/s 0.0s aiohttp 445.8kB @ 344.2kB/s 0.0s requests 56.7kB @ 43.7kB/s 0.0s aiobotocore 63.2kB @ 47.3kB/s 0.0s conda-package-handling 253.2kB @ 188.2kB/s 0.1s bcbio-gff 21.5kB @ 16.0kB/s 0.1s augur 186.1kB @ 133.6kB/s 0.1s google-auth-httplib2 13.7kB @ 9.9kB/s 0.1s jaxopt 91.7kB @ 65.8kB/s 0.0s awscli 2.1MB @ 1.5MB/s 0.1s numpyro 205.8kB @ 143.9kB/s 0.1s snakemake 8.8kB @ 6.1kB/s 0.0s reproc 30.3kB @ 20.7kB/s 0.0s libzlib 61.6kB @ 42.1kB/s 0.0s lz4-c 143.4kB @ 97.5kB/s 0.0s c-ares 113.4kB @ 74.4kB/s 0.1s unzip 169.1kB @ 110.9kB/s 0.1s libunistring 1.4MB @ 905.0kB/s 0.1s evofr 59.5kB @ 37.6kB/s 0.2s libuv 1.1MB @ 664.2kB/s 0.1s lerc 281.8kB @ 174.3kB/s 0.0s readline 281.5kB @ 170.6kB/s 0.0s fmt 189.7kB @ 114.8kB/s 0.0s icu 12.0MB @ 7.1MB/s 0.2s libxcb 384.2kB @ 224.9kB/s 0.1s gettext 4.3MB @ 2.5MB/s 0.1s libidn2 160.4kB @ 93.1kB/s 0.0s tk 3.5MB @ 2.0MB/s 0.1s libcblas 14.4kB @ 8.2kB/s 0.0s krb5 1.4MB @ 766.8kB/s 0.1s lcms2 242.1kB @ 135.2kB/s 0.0s libgrpc 5.3MB @ 2.9MB/s 0.1s [+] 1.9s libmamba 1.6MB @ 848.7kB/s 0.1s pybind11-abi 9.9kB @ 5.2kB/s 0.1s nextstrain-base 11.7kB @ 5.8kB/s 0.6s libcurl 373.0kB @ 186.3kB/s 0.3s setuptools 463.7kB @ 224.7kB/s 0.1s seqkit 7.4MB @ 3.5MB/s 0.2s reretry 12.2kB @ 5.8kB/s 0.0s nextclade 3.4MB @ 1.6MB/s 0.2s packaging 46.1kB @ 21.5kB/s 0.0s pygments 840.7kB @ 388.3kB/s 0.1s charset-normalizer 45.7kB @ 21.0kB/s 0.0s attrs 55.0kB @ 25.3kB/s 0.0s git 9.8MB @ 4.5MB/s 0.4s [+] 2.2s tomli 15.9kB @ 7.3kB/s 0.0s pysocks 19.0kB @ 8.6kB/s 0.0s pycparser 102.7kB @ 46.3kB/s 0.0s ftputil 42.9kB @ 19.3kB/s 0.0s jsonpointer 8.7kB @ 3.9kB/s 0.1s fasteners 20.0kB @ 8.9kB/s 0.0s defusedxml 24.1kB @ 10.6kB/s 0.1s typing-extensions 10.1kB @ 4.4kB/s 0.1s gitdb 51.6kB @ 22.6kB/s 0.0s python-dateutil 246.0kB @ 107.5kB/s 0.0s pytest 243.7kB @ 105.4kB/s 0.0s wcmatch 34.7kB @ 15.0kB/s 0.0s tqdm 88.2kB @ 38.0kB/s 0.0s epiweeks 12.9kB @ 5.6kB/s 0.0s ruamel.yaml.clib 135.3kB @ 57.3kB/s 0.1s pyrsistent 100.2kB @ 42.4kB/s 0.0s unicodedata2 512.2kB @ 216.0kB/s 0.0s [+] 2.4s yarl 97.0kB @ 40.4kB/s 0.0s python 25.5MB @ 10.5MB/s 0.4s google-crc32c 24.9kB @ 10.2kB/s 0.0s opt_einsum 54.5kB @ 22.1kB/s 0.0s matplotlib-base 6.8MB @ 2.7MB/s 0.1s amply 21.9kB @ 8.6kB/s 0.1s docutils 1.3MB @ 509.7kB/s 0.2s datrie 148.2kB @ 58.2kB/s 0.2s nbformat 100.8kB @ 39.1kB/s 0.0s s3transfer 60.7kB @ 23.6kB/s 0.0s paramiko 158.2kB @ 61.3kB/s 0.0s pulp 141.3kB @ 54.4kB/s 0.1s mamba 50.8kB @ 19.5kB/s 0.0s google-cloud-core 28.6kB @ 10.8kB/s 0.1s google-cloud-storage 83.0kB @ 31.2kB/s 0.1s jax 968.7kB @ 361.1kB/s 0.1s [+] 2.7s numpy 6.8MB @ 2.5MB/s 0.4s libgomp 419.2kB @ 152.5kB/s 0.1s python_abi 5.7kB @ 2.1kB/s 0.1s libexpat 78.0kB @ 28.1kB/s 0.0s pthread-stubs 5.6kB @ 2.0kB/s 0.0s libffi 58.3kB @ 20.7kB/s 0.1s libdeflate 65.2kB @ 22.9kB/s 0.1s libcrc32c 20.4kB @ 7.2kB/s 0.1s openssl 2.6MB @ 917.3kB/s 0.2s zstd 431.1kB @ 149.1kB/s 0.1s libsqlite 828.9kB @ 284.8kB/s 0.1s freetype 625.7kB @ 210.6kB/s 0.1s bash 1.8MB @ 592.3kB/s 0.1s pcre2 2.4MB @ 789.9kB/s 0.2s coin-or-osi 389.4kB @ 126.3kB/s 0.1s coin-or-cbc 941.2kB @ 300.0kB/s 0.1s gsl 3.4MB @ 1.1MB/s 0.2s jaxlib 37.7MB @ 12.0MB/s 0.6s nextalign 2.1MB @ 648.2kB/s 0.1s vcftools 482.7kB @ 151.5kB/s 0.0s toposort 13.6kB @ 4.3kB/s 0.0s pyjwt 24.5kB @ 7.7kB/s 0.0s exceptiongroup 19.0kB @ 6.0kB/s 0.0s backports 6.0kB @ 1.8kB/s 0.0s ply 44.8kB @ 13.9kB/s 0.0s libprotobuf 2.2MB @ 685.0kB/s 0.4s absl-py 102.0kB @ 31.6kB/s 0.0s jmespath 21.0kB @ 6.5kB/s 0.0s cycler 10.3kB @ 3.2kB/s 0.0s appdirs 12.8kB @ 4.0kB/s 0.0s backports.functools_lru_cache 11.5kB @ 3.5kB/s 0.0s markdown-it-py 64.4kB @ 19.8kB/s 0.0s async-timeout 9.3kB @ 2.9kB/s 0.0s prettytable 29.9kB @ 9.1kB/s 0.0s pyfastx 75.6kB @ 22.9kB/s 0.1s psutil 362.3kB @ 109.3kB/s 0.1s grpcio 746.7kB @ 224.8kB/s 0.1s brotlipy 350.7kB @ 104.8kB/s 0.0s cvxopt 509.2kB @ 152.1kB/s 0.1s jsonschema 46.0kB @ 13.7kB/s 0.0s conda-package-streaming 18.8kB @ 5.6kB/s 0.0s boto3 78.6kB @ 23.3kB/s 0.0s google-auth 102.1kB @ 29.8kB/s 0.1s s3fs 26.1kB @ 7.6kB/s 0.1s bx-python 1.1MB @ 304.5kB/s 0.1s nextstrain-cli 112.1kB @ 32.1kB/s 0.1s libuuid 33.6kB @ 9.6kB/s 0.0s botocore 6.2MB @ 1.8MB/s 0.2s yaml 89.1kB @ 25.1kB/s 0.0s libev 106.2kB @ 29.9kB/s 0.0s pandas 12.0MB @ 3.4MB/s 0.3s zip 113.0kB @ 31.5kB/s 0.1s zlib 92.8kB @ 25.9kB/s 0.1s libpng 282.6kB @ 78.8kB/s 0.1s libstdcxx-ng 3.8MB @ 1.1MB/s 0.2s libtiff 418.2kB @ 115.6kB/s 0.0s coin-or-cgl 551.4kB @ 150.1kB/s 0.1s traitlets 98.4kB @ 26.8kB/s 0.1s libnghttp2 622.4kB @ 168.5kB/s 0.1s iniconfig 11.1kB @ 3.0kB/s 0.1s filelock 14.9kB @ 4.0kB/s 0.1s toolz 49.1kB @ 13.1kB/s 0.0s idna 56.7kB @ 15.1kB/s 0.0s logmuse 10.7kB @ 2.8kB/s 0.0s jsonpatch 14.6kB @ 3.8kB/s 0.1s oauth2client 67.5kB @ 17.6kB/s 0.0s networkx 1.6MB @ 417.4kB/s 0.2s python-lzo 20.7kB @ 5.3kB/s 0.1s frozenlist 53.6kB @ 13.7kB/s 0.1s perl 13.3MB @ 3.4MB/s 0.5s jupyter_core 92.5kB @ 23.3kB/s 0.2s ruamel.yaml 203.1kB @ 50.8kB/s 0.2s fonttools 2.2MB @ 521.2kB/s 0.3s jinja2 101.4kB @ 24.4kB/s 0.1s yte 14.1kB @ 3.4kB/s 0.1s google-resumable-media 43.8kB @ 10.5kB/s 0.1s nodejs 15.6MB @ 3.7MB/s 0.7s treetime 117.2kB @ 27.7kB/s 0.1s google-api-core 77.7kB @ 18.3kB/s 0.1s aioeasywebdav 12.5kB @ 3.0kB/s 0.1s gmp 825.8kB @ 191.9kB/s 0.1s libedit 123.9kB @ 28.8kB/s 0.1s libbrotlidec 32.6kB @ 7.6kB/s 0.1s tbb 1.5MB @ 352.5kB/s 0.1s stopit 16.1kB @ 3.7kB/s 0.0s raxml 3.2MB @ 734.2kB/s 0.1s importlib-metadata 25.9kB @ 5.9kB/s 0.0s colorama 18.0kB @ 4.1kB/s 0.0s platformdirs 19.5kB @ 4.4kB/s 0.0s wrapt 53.7kB @ 12.1kB/s 0.0s kiwisolver 77.4kB @ 17.3kB/s 0.0s bcrypt 46.0kB @ 10.3kB/s 0.0s pooch 50.9kB @ 11.3kB/s 0.0s dropbox 979.1kB @ 212.9kB/s 0.1s google-api-python-client 5.6MB @ 1.2MB/s 0.4s iqtree 7.7MB @ 1.7MB/s 0.3s re2 200.7kB @ 42.7kB/s 0.1s isa-l 196.1kB @ 41.6kB/s 0.0s mafft 3.3MB @ 709.7kB/s 0.4s libopenblas 5.4MB @ 1.1MB/s 0.2s wget 834.9kB @ 174.2kB/s 0.1s openjpeg 352.0kB @ 73.1kB/s 0.1s tabulate 35.9kB @ 7.4kB/s 0.0s ncbi-datasets-cli 12.1MB @ 2.5MB/s 0.3s cachetools 14.6kB @ 3.0kB/s 0.0s httplib2 94.8kB @ 19.4kB/s 0.0s configargparse 40.5kB @ 8.3kB/s 0.1s libgfortran-ng 23.2kB @ 4.7kB/s 0.0s python-isal 48.3kB @ 9.7kB/s 0.1s xz 418.4kB @ 83.5kB/s 0.1s jq 354.2kB @ 70.7kB/s 0.1s smart_open 47.4kB @ 9.4kB/s 0.0s dsdp 240.6kB @ 47.3kB/s 0.1s csvtk 8.5MB @ 1.7MB/s 0.4s filechunkio 5.1kB @ 988.0 B/s 0.1s rsa 28.2kB @ 5.5kB/s 0.0s humanfriendly 123.3kB @ 23.9kB/s 0.0s zstandard 393.7kB @ 76.0kB/s 0.1s blackjax 79.7kB @ 15.4kB/s 0.1s pytz 186.5kB @ 35.7kB/s 0.0s scipy 15.2MB @ 2.9MB/s 0.3s multipledispatch 12.3kB @ 2.3kB/s 0.0s ubiquerg 16.0kB @ 3.0kB/s 0.0s metis 4.3MB @ 812.2kB/s 0.1s libgcc-ng 776.3kB @ 145.3kB/s 0.1s pip 1.4MB @ 258.1kB/s 0.1s snakemake-minimal 273.3kB @ 50.8kB/s 0.1s gitpython 145.4kB @ 27.0kB/s 0.1s xopen 30.9kB @ 5.6kB/s 0.1s fftw 2.0MB @ 366.6kB/s 0.1s ruby 8.2MB @ 1.5MB/s 0.3s urllib3 112.5kB @ 20.4kB/s 0.1s pyasn1 54.3kB @ 9.8kB/s 0.0s brotli-bin 20.4kB @ 3.7kB/s 0.0s libsodium 375.0kB @ 67.2kB/s 0.1s conda 1.0MB @ 183.9kB/s 0.1s bracex 14.0kB @ 2.5kB/s 0.1s coin-or-clp 1.2MB @ 207.5kB/s 0.1s pillow 46.6MB @ 8.1MB/s 0.9s Linking _libgcc_mutex-0.1-conda_forge Linking pbzip2-1.1.13-0 Linking ca-certificates-2023.5.7-hbcca054_0 Linking ld_impl_linux-64-2.40-h41732ed_0 Linking libgfortran5-13.1.0-h15d22d2_0 Linking libstdcxx-ng-13.1.0-hfd8a6a1_0 Linking python_abi-3.10-3_cp310 Linking libgomp-13.1.0-he5830b7_0 Linking ncbi-datasets-cli-15.9.1-ha770c72_0 Linking libgfortran-ng-13.1.0-h69a702a_0 Linking _openmp_mutex-4.5-2_gnu Linking libgcc-ng-13.1.0-he5830b7_0 Linking xorg-libxau-1.0.11-hd590300_0 Linking reproc-14.2.4-h0b41bf4_0 Linking re2-2023.02.01-hcb278e6_0 Linking openssl-3.1.1-hd590300_1 Linking ncurses-6.4-hcb278e6_0 ^[ Linking lz4-c-1.9.4-hcb278e6_0 Linking libzlib-1.2.13-hd590300_5 Linking libwebp-base-1.3.1-hd590300_0 Linking libuuid-2.38.1-h0b41bf4_0 Linking libopenblas-0.3.23-pthreads_h80387f5_0 Linking libjpeg-turbo-2.1.5.1-h0b41bf4_0 Linking libexpat-2.5.0-hcb278e6_1 Linking libdeflate-1.18-h0b41bf4_0 Linking libbrotlicommon-1.0.9-h166bdaf_9 Linking libabseil-20220623.0-cxx17_h05df665_6 Linking icu-72.1-hcb278e6_0 Linking fftw-3.3.10-nompi_hc118613_108 Linking c-ares-1.19.1-hd590300_0 Linking zip-3.0-h7f98852_1 Linking yaml-cpp-0.7.0-h27087fc_2 Linking yaml-0.2.5-h7f98852_2 Linking xz-5.2.6-h166bdaf_0 Linking xorg-libxdmcp-1.1.3-h7f98852_0 Linking unzip-6.0-h7f98852_3 Linking pthread-stubs-0.4-h36c2ea0_1001 Linking oniguruma-6.9.8-h166bdaf_0 Linking metis-5.1.0-h58526e2_1006 Linking lzo-2.10-h516909a_1000 Linking libuv-1.44.2-h166bdaf_0 Linking libunistring-0.9.10-h7f98852_0 Linking libsodium-1.0.18-h36c2ea0_1 Linking libnsl-2.0.0-h7f98852_0 Linking libiconv-1.17-h166bdaf_0 Linking libffi-3.4.2-h7f98852_5 Linking libev-4.33-h516909a_1 Linking libcrc32c-1.1.2-h9c3ff4c_0 Linking lerc-4.0.0-h27087fc_0 Linking keyutils-1.6.1-h166bdaf_0 Linking isa-l-2.30.0-ha770c72_4 Linking gzip-1.12-h166bdaf_0 Linking gmp-6.2.1-h58526e2_0 Linking gettext-0.21.1-h27087fc_0 Linking fmt-9.1.0-h924138e_0 Linking bzip2-1.0.8-h7f98852_4 Linking reproc-cpp-14.2.4-hcb278e6_0 Linking readline-8.2-h8228510_1 Linking libedit-3.1.20191231-he28a2e2_2 Linking zstd-1.5.2-hfc55251_7 Linking zlib-1.2.13-hd590300_5 Linking libssh2-1.11.0-h0841786_0 Linking libsqlite-3.42.0-h2797004_0 Linking libsolv-0.7.24-hfc55251_1 Linking libprotobuf-3.21.12-h3eb15da_0 Linking libpng-1.6.39-h753d276_0 Linking tk-8.6.12-h27826a3_0 Linking libblas-3.9.0-17_linux64_openblas Linking libbrotlienc-1.0.9-h166bdaf_9 Linking libbrotlidec-1.0.9-h166bdaf_9 Linking libxcb-1.15-h0b41bf4_0 Linking jq-1.6-h36c2ea0_1000 Linking perl-5.32.1-4_hd590300_perl5 Linking libxml2-2.11.4-h0d562d8_0 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jaxlib-0.3.25-cpu_py310hdc47304_1 Linking bcbio-gff-0.7.0-pyh7cba7a3_0 Linking snakemake-minimal-7.30.1-pyhdfd78af_0 Linking treetime-0.10.1-pyh7cba7a3_0 Linking augur-22.1.0-pyhdfd78af_0 Linking google-auth-2.22.0-pyh1a96a4e_0 Linking aiobotocore-2.5.2-pyhd8ed1ab_0 Linking aioeasywebdav-2.4.0-pyha770c72_0 Linking jax-0.3.25-pyhd8ed1ab_0 Linking google-api-core-2.11.1-pyhd8ed1ab_0 Linking google-auth-httplib2-0.1.0-pyhd8ed1ab_1 Linking s3fs-2021.7.0-pyhd8ed1ab_0 Linking jaxopt-0.7-pyhd8ed1ab_0 Linking numpyro-0.9.2-pyhd8ed1ab_0 Linking google-cloud-core-2.3.3-pyhd8ed1ab_0 Linking google-api-python-client-2.93.0-pyhd8ed1ab_0 Linking blackjax-0.9.6-pyhd8ed1ab_0 warning libmamba [blackjax-0.9.6-pyhd8ed1ab_0] The following files were already present in the environment: - lib/python3.10/site-packages/tests/__init__.py Linking google-cloud-storage-2.10.0-pyh1a96a4e_0 Linking nextstrain-cli-7.1.0-pyhdfd78af_0 Linking evofr-0.1.20-pyhdfd78af_0 Linking snakemake-7.30.1-hdfd78af_0 Linking nextstrain-base-20230717T174555Z-hb0f4dca_0_locked Transaction finished Cleaning up… __ __ ______ ___ ____ _____ ___ / /_ ____ _ / / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/ / /_/ / / / / / / /_/ / / / / / / /_/ / /_/ / / .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/ /_/ Collect information.. Cleaning index cache.. Cleaning lock files.. Package file Size ───────────────────────────────────────────────────────────────────── /tmp/tmp.yDsm6IreKo/runtimes/conda/micromamba/pkgs ───────────────────────────────────────────────────────────────────── _libgcc_mutex-0.1-conda_forge.tar.bz2 3kB _openmp_mutex-4.5-2_gnu.tar.bz2 24kB absl-py-1.4.0-pyhd8ed1ab_0.conda 102kB aiobotocore-2.5.2-pyhd8ed1ab_0.conda 63kB aioeasywebdav-2.4.0-pyha770c72_0.tar.bz2 13kB aiohttp-3.8.4-py310h2372a71_1.conda 446kB aioitertools-0.11.0-pyhd8ed1ab_0.tar.bz2 23kB aiosignal-1.3.1-pyhd8ed1ab_0.tar.bz2 13kB amply-0.1.6-pyhd8ed1ab_0.conda 22kB appdirs-1.4.4-pyh9f0ad1d_0.tar.bz2 13kB async-timeout-4.0.2-pyhd8ed1ab_0.tar.bz2 9kB attmap-0.13.2-pyhd8ed1ab_0.tar.bz2 14kB attrs-23.1.0-pyh71513ae_1.conda 55kB augur-22.1.0-pyhdfd78af_0.tar.bz2 186kB auspice-2.46.0-hdbdd923_2.tar.bz2 38MB awscli-1.27.161-py310hff52083_0.conda 2MB backports-1.0-pyhd8ed1ab_3.conda 6kB backports.functools_lru_cache-1.6.5-pyhd8ed1ab_0.conda 12kB backrefs-5.2-pyhd8ed1ab_2.tar.bz2 204kB 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/tmp/tmp.yDsm6IreKo/runtimes/conda/.mamba/pkgs ───────────────────────────────────────────────────────────────────── ───────────────────────────────────────────────────────────────────── Total size: 435MB Cleaning tarballs.. Package folder Size ─────────────────────────────────────────────────────────────── /tmp/tmp.yDsm6IreKo/runtimes/conda/micromamba/pkgs ─────────────────────────────────────────────────────────────── _libgcc_mutex-0.1-conda_forge 6kB _openmp_mutex-4.5-2_gnu 102kB absl-py-1.4.0-pyhd8ed1ab_0 460kB aiobotocore-2.5.2-pyhd8ed1ab_0 288kB aioeasywebdav-2.4.0-pyha770c72_0 40kB aiohttp-3.8.4-py310h2372a71_1 2MB aioitertools-0.11.0-pyhd8ed1ab_0 110kB aiosignal-1.3.1-pyhd8ed1ab_0 43kB amply-0.1.6-pyhd8ed1ab_0 78kB appdirs-1.4.4-pyh9f0ad1d_0 47kB async-timeout-4.0.2-pyhd8ed1ab_0 27kB attmap-0.13.2-pyhd8ed1ab_0 46kB attrs-23.1.0-pyh71513ae_1 234kB augur-22.1.0-pyhdfd78af_0 882kB auspice-2.46.0-hdbdd923_2 156MB awscli-1.27.161-py310hff52083_0 12MB backports-1.0-pyhd8ed1ab_3 15kB backports.functools_lru_cache-1.6.5-pyhd8ed1ab_0 31kB backrefs-5.2-pyhd8ed1ab_2 2MB bash-5.2.15-hfbf034d_0 11MB bcbio-gff-0.7.0-pyh7cba7a3_0 77kB bcrypt-3.2.2-py310h5764c6d_1 124kB biopython-1.81-py310h1fa729e_0 16MB blackjax-0.9.6-pyhd8ed1ab_0 408kB boltons-23.0.0-pyhd8ed1ab_0 1MB boto3-1.26.161-pyhd8ed1ab_0 1MB botocore-1.29.161-pyhd8ed1ab_0 86MB bracex-2.2.1-pyhd8ed1ab_0 45kB brotli-1.0.9-h166bdaf_9 81kB brotli-bin-1.0.9-h166bdaf_9 69kB brotlipy-0.7.0-py310h5764c6d_1005 820kB bx-python-0.9.0-py310h1ae98be_2 4MB bzip2-1.0.8-h7f98852_4 2MB c-ares-1.19.1-hd590300_0 451kB ca-certificates-2023.5.7-hbcca054_0 293kB cachetools-5.3.1-pyhd8ed1ab_0 55kB certifi-2023.5.7-pyhd8ed1ab_0 305kB cffi-1.15.1-py310h255011f_3 873kB charset-normalizer-3.2.0-pyhd8ed1ab_0 185kB coin-or-cbc-2.10.10-h9002f0b_0 3MB coin-or-cgl-0.60.7-h516709c_0 2MB coin-or-clp-1.17.8-h1ee7a9c_0 4MB coin-or-osi-0.108.8-ha2443b9_0 1MB coin-or-utils-2.11.9-hee58242_0 2MB coincbc-2.10.10-0_metapackage 31kB colorama-0.4.4-pyh9f0ad1d_0 60kB conda-23.5.2-py310hff52083_0 4MB conda-package-handling-2.0.2-pyh38be061_0 324kB conda-package-streaming-0.8.0-pyhd8ed1ab_0 57kB configargparse-1.5.5-pyhd8ed1ab_0 183kB connection_pool-0.0.3-pyhd3deb0d_0 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pyopenssl-23.2.0-pyhd8ed1ab_1 612kB pyparsing-3.1.0-pyhd8ed1ab_0 413kB pyrsistent-0.19.3-py310h1fa729e_0 408kB pysftp-0.2.9-py_1 63kB pysocks-1.7.1-pyha2e5f31_6 67kB pytest-7.4.0-pyhd8ed1ab_0 1MB python-3.10.12-hd12c33a_0_cpython 79MB python-dateutil-2.8.2-pyhd8ed1ab_0 482kB python-fastjsonschema-2.17.1-pyhd8ed1ab_0 5MB python-irodsclient-1.1.8-pyhd8ed1ab_0 750kB python-isal-1.1.0-py310h2372a71_2 179kB python-lzo-1.15-py310hdb7cb10_0 80kB python_abi-3.10-3_cp310 14kB pytz-2023.3-pyhd8ed1ab_0 1MB pyu2f-0.1.5-pyhd8ed1ab_0 144kB pyyaml-5.4.1-py310h5764c6d_4 685kB raxml-8.2.12-h031d066_6 7MB re2-2023.02.01-hcb278e6_0 584kB readline-8.2-h8228510_1 1MB reproc-14.2.4-h0b41bf4_0 88kB reproc-cpp-14.2.4-hcb278e6_0 74kB requests-2.31.0-pyhd8ed1ab_0 228kB reretry-0.11.8-pyhd8ed1ab_0 36kB rich-13.4.2-pyhd8ed1ab_0 984kB rsa-4.7.2-pyh44b312d_0 111kB ruamel.yaml-0.17.32-py310h2372a71_0 933kB ruamel.yaml.clib-0.2.7-py310h1fa729e_1 401kB ruby-3.2.2-hff50039_0 31MB s3fs-2021.7.0-pyhd8ed1ab_0 108kB s3transfer-0.6.1-pyhd8ed1ab_0 327kB scipy-1.11.1-py310ha4c1d20_0 61MB seqkit-2.5.0-h9ee0642_0 18MB setuptools-68.0.0-pyhd8ed1ab_0 3MB setuptools-scm-7.1.0-pyhd8ed1ab_0 139kB six-1.16.0-pyh6c4a22f_0 51kB slacker-0.14.0-py_0 76kB smart_open-6.3.0-pyhd8ed1ab_1 196kB smmap-3.0.5-pyh44b312d_0 87kB snakemake-7.30.1-hdfd78af_0 26kB snakemake-minimal-7.30.1-pyhdfd78af_0 1MB stone-3.3.1-pyhd8ed1ab_0 1MB stopit-1.1.2-py_0 82kB suitesparse-5.10.1-h9e50725_1 9MB tabulate-0.9.0-pyhd8ed1ab_1 149kB tbb-2021.9.0-hf52228f_0 5MB throttler-1.2.1-pyhd8ed1ab_0 34kB tk-8.6.12-h27826a3_0 11MB tomli-2.0.1-pyhd8ed1ab_0 51kB toolz-0.12.0-pyhd8ed1ab_0 219kB toposort-1.10-pyhd8ed1ab_0 46kB tqdm-4.65.0-pyhd8ed1ab_1 374kB traitlets-5.9.0-pyhd8ed1ab_0 500kB treetime-0.10.1-pyh7cba7a3_0 547kB tsv-utils-2.2.0-h9ee0642_0 32MB typing-extensions-4.7.1-hd8ed1ab_0 28kB typing_extensions-4.7.1-pyha770c72_0 160kB tzdata-2023c-h71feb2d_0 649kB ubiquerg-0.6.2-pyhd8ed1ab_0 50kB unicodedata2-15.0.0-py310h5764c6d_0 1MB unzip-6.0-h7f98852_3 635kB uritemplate-4.1.1-pyhd8ed1ab_0 41kB urllib3-1.26.15-pyhd8ed1ab_0 472kB vcftools-0.1.16-pl5321hdcf5f25_9 1MB veracitools-0.1.3-py_0 16kB wcmatch-8.3-pyhd8ed1ab_0 166kB wcwidth-0.2.6-pyhd8ed1ab_0 469kB wget-1.20.3-ha35d2d1_1 3MB wheel-0.40.0-pyhd8ed1ab_1 226kB wrapt-1.15.0-py310h1fa729e_0 204kB xopen-1.7.0-py310hff52083_2 106kB xorg-libxau-1.0.11-hd590300_0 41kB xorg-libxdmcp-1.1.3-h7f98852_0 55kB xz-5.2.6-h166bdaf_0 2MB yaml-0.2.5-h7f98852_2 390kB yaml-cpp-0.7.0-h27087fc_2 709kB yarl-1.9.2-py310h2372a71_0 379kB yte-1.5.1-pyha770c72_2 41kB zip-3.0-h7f98852_1 258kB zipp-3.16.2-pyhd8ed1ab_0 58kB zlib-1.2.13-hd590300_5 296kB zstandard-0.19.0-py310h1275a96_2 1MB zstd-1.5.2-hfc55251_7 1MB /tmp/tmp.yDsm6IreKo/runtimes/conda/.mamba/pkgs ─────────────────────────────────────────────────────────────── ─────────────────────────────────────────────────────────────── Total size: 2GB Cleaning packages.. warning libmamba This does not check for packages installed using symlinks back to the package cache. Checking setup… ✔ yes: operating system is supported ✔ yes: runtime data dir doesn't have spaces ✔ yes: runtime appears set up ✔ yes: snakemake is installed and runnable ✔ yes: augur is installed and runnable ✔ yes: auspice is installed and runnable Setting default runtime to conda. All good! Set up of conda complete. tom@whunk tmp.yDsm6IreKo (v) (py:3.7.17) $ NEXTSTRAIN_HOME="$PWD" nextstrain version --verbose nextstrain.cli 7.2.0 Python /tmp/tmp.yDsm6IreKo/.venv/bin/python3 3.7.17 (default, Aug 30 2023, 09:59:09) [GCC 7.5.0] Runners docker nextstrain/base not present conda (default) nextstrain-base 20230717T174555Z (hb0f4dca_0_locked, nextstrain) augur 22.1.0 auspice 2.46.0 singularity docker://nextstrain/base (not present) ambient unknown aws-batch unknown tom@whunk tmp.yDsm6IreKo [148] (v) (py:3.7.17) $ NEXTSTRAIN_HOME="$PWD" nextstrain update conda Checking for newer versions of Nextstrain CLI… nextstrain-cli is up to date! Updating conda runtime… Updating Conda package nextstrain-base from 20230717T174555Z to 20230830T164409Z… Updating Conda packages in /tmp/tmp.yDsm6IreKo/runtimes/conda/env… - nextstrain-base ==20230830T164409Z __ __ ______ ___ ____ _____ ___ / /_ ____ _ / / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/ / /_/ / / / / / / /_/ / / / / / / /_/ / /_/ / / .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/ /_/ nextstrain/linux-64 41.6kB @ 97.1kB/s 0.4s nextstrain/noarch 130.0 B @ 225.0 B/s 0.6s bioconda/noarch 4.7MB @ 3.0MB/s 1.2s bioconda/linux-64 5.1MB @ 2.5MB/s 2.1s conda-forge/noarch 13.9MB @ 3.9MB/s 3.7s conda-forge/linux-64 33.9MB @ 4.3MB/s 8.2s Transaction Prefix: /tmp/tmp.yDsm6IreKo/runtimes/conda/env Updating specs: - nextstrain-base==20230830T164409Z Package Version Build Channel Size ─────────────────────────────────────────────────────────────────────────────────────────────────────── Install: ─────────────────────────────────────────────────────────────────────────────────────────────────────── + eido 0.2.1 pyhd8ed1ab_0 conda-forge/noarch 20kB + importlib_metadata 6.8.0 hd8ed1ab_0 conda-forge/noarch 9kB + ml_dtypes 0.2.0 py310h7cbd5c2_1 conda-forge/linux-64 691kB Change: ─────────────────────────────────────────────────────────────────────────────────────────────────────── - bash 5.2.15 hfbf034d_0 conda-forge 2MB + bash 5.2.15 h7f99829_1 conda-forge/linux-64 2MB - evofr 0.1.20 pyhdfd78af_0 bioconda 60kB + evofr 0.1.20 pyhdfd78af_1 bioconda/noarch 60kB - libtiff 4.5.1 h8b53f26_0 conda-forge 418kB + libtiff 4.5.1 h8b53f26_1 conda-forge/linux-64 417kB - libuv 1.44.2 h166bdaf_0 conda-forge 1MB + libuv 1.44.2 hd590300_1 conda-forge/linux-64 824kB - zstandard 0.19.0 py310h1275a96_2 conda-forge 394kB + zstandard 0.19.0 py310h5764c6d_0 conda-forge/linux-64 671kB Upgrade: ─────────────────────────────────────────────────────────────────────────────────────────────────────── - aiobotocore 2.5.2 pyhd8ed1ab_0 conda-forge 63kB + aiobotocore 2.5.4 pyhd8ed1ab_0 conda-forge/noarch 64kB - aiohttp 3.8.4 py310h2372a71_1 conda-forge 446kB + aiohttp 3.8.5 py310h2372a71_0 conda-forge/linux-64 454kB - async-timeout 4.0.2 pyhd8ed1ab_0 conda-forge 9kB + async-timeout 4.0.3 pyhd8ed1ab_0 conda-forge/noarch 11kB - augur 22.1.0 pyhdfd78af_0 bioconda 186kB + augur 22.4.0 pyhdfd78af_0 bioconda/noarch 190kB - auspice 2.46.0 hdbdd923_2 bioconda 38MB + auspice 2.47.0 hdbdd923_0 bioconda/linux-64 38MB - awscli 1.27.161 py310hff52083_0 conda-forge 2MB + awscli 1.29.17 py310hff52083_0 conda-forge/linux-64 2MB - boto3 1.26.161 pyhd8ed1ab_0 conda-forge 79kB + boto3 1.28.17 pyhd8ed1ab_0 conda-forge/noarch 78kB - botocore 1.29.161 pyhd8ed1ab_0 conda-forge 6MB + botocore 1.31.17 pyhd8ed1ab_3 conda-forge/noarch 6MB - bx-python 0.9.0 py310h1ae98be_2 bioconda 1MB + bx-python 0.10.0 py310h551a815_0 bioconda/linux-64 1MB - ca-certificates 2023.5.7 hbcca054_0 conda-forge 148kB + ca-certificates 2023.7.22 hbcca054_0 conda-forge/linux-64 150kB - certifi 2023.5.7 pyhd8ed1ab_0 conda-forge 152kB + certifi 2023.7.22 pyhd8ed1ab_0 conda-forge/noarch 154kB - configargparse 1.5.5 pyhd8ed1ab_0 conda-forge 41kB + configargparse 1.7 pyhd8ed1ab_0 conda-forge/noarch 39kB - cryptography 41.0.2 py310h75e40e8_0 conda-forge 2MB + cryptography 41.0.3 py310h75e40e8_0 conda-forge/linux-64 2MB - csvtk 0.26.0 h9ee0642_0 bioconda 8MB + csvtk 0.27.2 h9ee0642_0 bioconda/linux-64 8MB - curl 8.1.2 hca28451_1 conda-forge 90kB + curl 8.2.1 hca28451_0 conda-forge/linux-64 90kB - cvxopt 1.3.1 py310h14a12bf_0 conda-forge 509kB + cvxopt 1.3.2 py310h14a12bf_0 conda-forge/linux-64 505kB - exceptiongroup 1.1.2 pyhd8ed1ab_0 conda-forge 19kB + exceptiongroup 1.1.3 pyhd8ed1ab_0 conda-forge/noarch 19kB - fonttools 4.41.0 py310h2372a71_0 conda-forge 2MB + fonttools 4.42.1 py310h2372a71_0 conda-forge/linux-64 2MB - git 2.41.0 pl5321h86e50cf_0 conda-forge 10MB + git 2.42.0 pl5321h86e50cf_0 conda-forge/linux-64 10MB - google-api-python-client 2.93.0 pyhd8ed1ab_0 conda-forge 6MB + google-api-python-client 2.97.0 pyhd8ed1ab_0 conda-forge/noarch 6MB - googleapis-common-protos 1.59.1 pyhd8ed1ab_0 conda-forge 120kB + googleapis-common-protos 1.60.0 pyhd8ed1ab_0 conda-forge/noarch 121kB - grpcio 1.51.1 py310h4a5735c_1 conda-forge 747kB + grpcio 1.56.2 py310h1b8f574_1 conda-forge/linux-64 765kB - icu 72.1 hcb278e6_0 conda-forge 12MB + icu 73.2 h59595ed_0 conda-forge/linux-64 12MB - importlib_resources 6.0.0 pyhd8ed1ab_1 conda-forge 28kB + importlib_resources 6.0.1 pyhd8ed1ab_0 conda-forge/noarch 31kB - iqtree 2.2.2.7 h21ec9f0_2 bioconda 8MB + iqtree 2.2.3 h21ec9f0_0 bioconda/linux-64 8MB - jax 0.3.25 pyhd8ed1ab_0 conda-forge 969kB + jax 0.4.14 pyhd8ed1ab_1 conda-forge/noarch 1MB - jaxlib 0.3.25 cpu_py310hdc47304_1 conda-forge 38MB + jaxlib 0.4.14 cpu_py310h46886e1_1 conda-forge/linux-64 47MB - jaxopt 0.7 pyhd8ed1ab_0 conda-forge 92kB + jaxopt 0.8 pyhd8ed1ab_0 conda-forge/noarch 99kB - kiwisolver 1.4.4 py310hbf28c38_1 conda-forge 77kB + kiwisolver 1.4.5 py310hd41b1e2_0 conda-forge/linux-64 73kB - krb5 1.21.1 h659d440_0 conda-forge 1MB + krb5 1.21.2 h659d440_0 conda-forge/linux-64 1MB - libabseil 20220623.0 cxx17_h05df665_6 conda-forge 1MB + libabseil 20230125.3 cxx17_h59595ed_0 conda-forge/linux-64 1MB - libcurl 8.1.2 hca28451_1 conda-forge 373kB + libcurl 8.2.1 hca28451_0 conda-forge/linux-64 373kB - libgrpc 1.51.1 h4fad500_1 conda-forge 5MB + libgrpc 1.56.2 h3905398_1 conda-forge/linux-64 6MB - libhwloc 2.9.1 nocuda_h7313eea_6 conda-forge 3MB + libhwloc 2.9.2 default_h554bfaf_1009 conda-forge/linux-64 3MB - libprotobuf 3.21.12 h3eb15da_0 conda-forge 2MB + libprotobuf 4.23.3 hd1fb520_0 conda-forge/linux-64 3MB - libsqlite 3.42.0 h2797004_0 conda-forge 829kB + libsqlite 3.43.0 h2797004_0 conda-forge/linux-64 841kB - libxml2 2.11.4 h0d562d8_0 conda-forge 704kB + libxml2 2.11.5 h232c23b_1 conda-forge/linux-64 706kB - metis 5.1.0 h58526e2_1006 conda-forge 4MB + metis 5.1.1 h59595ed_1 conda-forge/linux-64 4MB - nbformat 5.9.1 pyhd8ed1ab_0 conda-forge 101kB + nbformat 5.9.2 pyhd8ed1ab_0 conda-forge/noarch 100kB - ncbi-datasets-cli 15.9.1 ha770c72_0 conda-forge 12MB + ncbi-datasets-cli 15.13.1 ha770c72_0 conda-forge/linux-64 12MB - nextstrain-base 20230717T174555Z hb0f4dca_0_locked nextstrain 12kB + nextstrain-base 20230830T164409Z hb0f4dca_0_locked nextstrain/linux-64 12kB - nextstrain-cli 7.1.0 pyhdfd78af_0 bioconda 112kB + nextstrain-cli 7.2.0 pyhdfd78af_0 bioconda/noarch 115kB - nodejs 18.16.1 hf52ce11_0 conda-forge 16MB + nodejs 20.5.1 hb753e55_1 conda-forge/linux-64 17MB - numpy 1.25.1 py310ha4c1d20_0 conda-forge 7MB + numpy 1.25.2 py310ha4c1d20_0 conda-forge/linux-64 7MB - numpyro 0.9.2 pyhd8ed1ab_0 conda-forge 206kB + numpyro 0.12.1 pyhd8ed1ab_0 conda-forge/noarch 223kB - openssl 3.1.1 hd590300_1 conda-forge 3MB + openssl 3.1.2 hd590300_0 conda-forge/linux-64 3MB - paramiko 3.2.0 pyhd8ed1ab_0 conda-forge 158kB + paramiko 3.3.1 pyhd8ed1ab_0 conda-forge/noarch 159kB - peppy 0.35.6 pyhd8ed1ab_0 conda-forge 32kB + peppy 0.35.7 pyhd8ed1ab_0 conda-forge/noarch 33kB - pip 23.2 pyhd8ed1ab_0 conda-forge 1MB + pip 23.2.1 pyhd8ed1ab_0 conda-forge/noarch 1MB - platformdirs 3.9.1 pyhd8ed1ab_0 conda-forge 20kB + platformdirs 3.10.0 pyhd8ed1ab_0 conda-forge/noarch 20kB - pluggy 1.2.0 pyhd8ed1ab_0 conda-forge 22kB + pluggy 1.3.0 pyhd8ed1ab_0 conda-forge/noarch 23kB - protobuf 4.21.12 py310heca2aa9_0 conda-forge 324kB + protobuf 4.23.3 py310hb875b13_0 conda-forge/linux-64 326kB - pygments 2.15.1 pyhd8ed1ab_0 conda-forge 841kB + pygments 2.16.1 pyhd8ed1ab_0 conda-forge/noarch 853kB - pyjwt 2.7.0 pyhd8ed1ab_0 conda-forge 24kB + pyjwt 2.8.0 pyhd8ed1ab_0 conda-forge/noarch 25kB - pyparsing 3.1.0 pyhd8ed1ab_0 conda-forge 89kB + pyparsing 3.1.1 pyhd8ed1ab_0 conda-forge/noarch 90kB - python-fastjsonschema 2.17.1 pyhd8ed1ab_0 conda-forge 226kB + python-fastjsonschema 2.18.0 pyhd8ed1ab_0 conda-forge/noarch 226kB - python-isal 1.1.0 py310h2372a71_2 conda-forge 48kB + python-isal 1.2.0 py310h2372a71_0 conda-forge/linux-64 49kB - pyyaml 5.4.1 py310h5764c6d_4 conda-forge 182kB + pyyaml 6.0.1 py310h2372a71_0 conda-forge/linux-64 171kB - re2 2023.02.01 hcb278e6_0 conda-forge 201kB + re2 2023.03.02 h8c504da_0 conda-forge/linux-64 201kB - rich 13.4.2 pyhd8ed1ab_0 conda-forge 184kB + rich 13.5.1 pyhd8ed1ab_0 conda-forge/noarch 184kB - s3transfer 0.6.1 pyhd8ed1ab_0 conda-forge 61kB + s3transfer 0.6.2 pyhd8ed1ab_0 conda-forge/noarch 61kB - scipy 1.11.1 py310ha4c1d20_0 conda-forge 15MB + scipy 1.11.2 py310ha4c1d20_0 conda-forge/linux-64 16MB - seqkit 2.5.0 h9ee0642_0 bioconda 7MB + seqkit 2.5.1 h9ee0642_0 bioconda/linux-64 7MB - setuptools 68.0.0 pyhd8ed1ab_0 conda-forge 464kB + setuptools 68.1.2 pyhd8ed1ab_0 conda-forge/noarch 462kB - snakemake 7.30.1 hdfd78af_0 bioconda 9kB + snakemake 7.32.3 hdfd78af_0 bioconda/noarch 9kB - snakemake-minimal 7.30.1 pyhdfd78af_0 bioconda 273kB + snakemake-minimal 7.32.3 pyhdfd78af_0 bioconda/noarch 278kB - tbb 2021.9.0 hf52228f_0 conda-forge 2MB + tbb 2021.10.0 h00ab1b0_0 conda-forge/linux-64 186kB - throttler 1.2.1 pyhd8ed1ab_0 conda-forge 11kB + throttler 1.2.2 pyhd8ed1ab_0 conda-forge/noarch 12kB - tqdm 4.65.0 pyhd8ed1ab_1 conda-forge 88kB + tqdm 4.66.1 pyhd8ed1ab_0 conda-forge/noarch 89kB - ubiquerg 0.6.2 pyhd8ed1ab_0 conda-forge 16kB + ubiquerg 0.6.3 pyhd8ed1ab_0 conda-forge/noarch 18kB - wheel 0.40.0 pyhd8ed1ab_1 conda-forge 57kB + wheel 0.41.2 pyhd8ed1ab_0 conda-forge/noarch 57kB - zstd 1.5.2 hfc55251_7 conda-forge 431kB + zstd 1.5.5 hfc55251_0 conda-forge/linux-64 545kB Summary: Install: 3 packages Change: 5 packages Upgrade: 72 packages Total download: 239MB ─────────────────────────────────────────────────────────────────────────────────────────────────────── Transaction starting ca-certificates 149.5kB @ 898.7kB/s 0.2s bash 1.8MB @ 7.4MB/s 0.2s fonttools 2.2MB @ 9.2MB/s 0.2s re2 201.2kB @ 729.3kB/s 0.0s cvxopt 505.2kB @ 1.8MB/s 0.3s zstandard 671.2kB @ 2.0MB/s 0.1s numpy 6.9MB @ 17.2MB/s 0.2s icu 12.1MB @ 26.4MB/s 0.5s libcurl 372.5kB @ 812.1kB/s 0.1s cryptography 1.9MB @ 4.0MB/s 0.1s curl 89.7kB @ 168.1kB/s 0.1s exceptiongroup 19.3kB @ 35.9kB/s 0.1s importlib_resources 30.6kB @ 52.2kB/s 0.1s platformdirs 19.8kB @ 32.0kB/s 0.1s pyjwt 24.8kB @ 38.5kB/s 0.1s botocore 6.3MB @ 9.5MB/s 0.2s throttler 12.3kB @ 18.4kB/s 0.1s scipy 15.6MB @ 22.6MB/s 0.4s wheel 57.5kB @ 83.7kB/s 0.0s jax 1.0MB @ 1.4MB/s 0.1s rich 183.8kB @ 252.6kB/s 0.1s aiohttp 453.5kB @ 583.0kB/s 0.1s numpyro 223.2kB @ 285.7kB/s 0.1s augur 189.8kB @ 231.5kB/s 0.0s ncbi-datasets-cli 12.1MB @ 14.8MB/s 0.6s nextstrain-cli 115.0kB @ 137.3kB/s 0.1s libsqlite 840.9kB @ 955.3kB/s 0.0s libuv 823.9kB @ 921.8kB/s 0.1s ml_dtypes 691.0kB @ 727.7kB/s 0.1s openssl 2.6MB @ 2.7MB/s 0.1s tbb 186.0kB @ 185.2kB/s 0.0s krb5 1.4MB @ 1.3MB/s 0.1s async-timeout 11.4kB @ 10.6kB/s 0.1s pygments 853.4kB @ 762.5kB/s 0.1s setuptools 462.3kB @ 391.6kB/s 0.1s jaxopt 99.1kB @ 82.7kB/s 0.5s google-api-python-client 5.9MB @ 4.9MB/s 0.2s paramiko 159.0kB @ 129.9kB/s 0.0s eido 19.9kB @ 15.7kB/s 0.1s pip 1.4MB @ 1.1MB/s 0.1s grpcio 764.8kB @ 575.6kB/s 0.1s nextstrain-base 12.2kB @ 9.0kB/s 0.5s googleapis-common-protos 121.0kB @ 87.6kB/s 0.1s evofr 59.5kB @ 42.4kB/s 0.1s zstd 545.2kB @ 377.2kB/s 0.1s seqkit 7.4MB @ 5.0MB/s 0.2s auspice 37.7MB @ 25.8MB/s 0.7s metis 3.9MB @ 2.7MB/s 0.1s libtiff 416.5kB @ 281.4kB/s 0.1s certifi 153.8kB @ 100.6kB/s 0.1s configargparse 39.5kB @ 25.8kB/s 0.1s tqdm 89.4kB @ 58.5kB/s 0.1s nbformat 100.4kB @ 65.7kB/s 0.1s protobuf 325.8kB @ 203.7kB/s 0.1s libgrpc 6.3MB @ 3.9MB/s 0.2s bx-python 1.2MB @ 736.8kB/s 0.1s libxml2 705.5kB @ 419.8kB/s 0.1s iqtree 7.8MB @ 4.5MB/s 0.2s python-fastjsonschema 225.9kB @ 127.8kB/s 0.1s [+] 1.8s libhwloc 2.6MB @ 1.4MB/s 0.2s boto3 78.2kB @ 43.3kB/s 0.1s snakemake-minimal 277.8kB @ 149.4kB/s 0.1s libabseil 1.2MB @ 665.5kB/s 0.1s kiwisolver 73.2kB @ 39.1kB/s 0.1s pyparsing 89.5kB @ 47.2kB/s 0.0s peppy 32.7kB @ 17.1kB/s 0.0s aiobotocore 63.8kB @ 33.0kB/s 0.0s pluggy 22.5kB @ 11.3kB/s 0.1s csvtk 8.5MB @ 4.2MB/s 0.5s pyyaml 171.1kB @ 83.4kB/s 0.0s libprotobuf 2.5MB @ 1.2MB/s 0.1s [+] 2.1s [+] 2.3s ubiquerg 17.9kB @ 7.1kB/s 0.6s s3transfer 60.7kB @ 23.3kB/s 0.6s awscli 2.2MB @ 805.7kB/s 0.7s git 9.7MB @ 3.6MB/s 0.9s snakemake 8.8kB @ 3.2kB/s 0.1s python-isal 49.3kB @ 17.6kB/s 0.2s importlib_metadata 9.4kB @ 3.3kB/s 0.1s [+] 2.9s nodejs 17.1MB @ 5.4MB/s 0.5s jaxlib 47.5MB @ 14.9MB/s 1.6s Changing bash-5.2.15-hfbf034d_0 ==> bash-5.2.15-h7f99829_1 Changing ca-certificates-2023.5.7-hbcca054_0 ==> ca-certificates-2023.7.22-hbcca054_0 Changing cvxopt-1.3.1-py310h14a12bf_0 ==> cvxopt-1.3.2-py310h14a12bf_0 Changing fonttools-4.41.0-py310h2372a71_0 ==> fonttools-4.42.1-py310h2372a71_0 Changing icu-72.1-hcb278e6_0 ==> icu-73.2-h59595ed_0 Changing kiwisolver-1.4.4-py310hbf28c38_1 ==> kiwisolver-1.4.5-py310hd41b1e2_0 Changing libabseil-20220623.0-cxx17_h05df665_6 ==> libabseil-20230125.3-cxx17_h59595ed_0 Changing libsqlite-3.42.0-h2797004_0 ==> libsqlite-3.43.0-h2797004_0 Changing libuv-1.44.2-h166bdaf_0 ==> libuv-1.44.2-hd590300_1 Changing metis-5.1.0-h58526e2_1006 ==> metis-5.1.1-h59595ed_1 Changing numpy-1.25.1-py310ha4c1d20_0 ==> numpy-1.25.2-py310ha4c1d20_0 Changing python-isal-1.1.0-py310h2372a71_2 ==> python-isal-1.2.0-py310h2372a71_0 Changing pyyaml-5.4.1-py310h5764c6d_4 ==> pyyaml-6.0.1-py310h2372a71_0 Changing re2-2023.02.01-hcb278e6_0 ==> re2-2023.03.02-h8c504da_0 Changing zstd-1.5.2-hfc55251_7 ==> zstd-1.5.5-hfc55251_0 Changing openssl-3.1.1-hd590300_1 ==> openssl-3.1.2-hd590300_0 Changing ncbi-datasets-cli-15.9.1-ha770c72_0 ==> ncbi-datasets-cli-15.13.1-ha770c72_0 Changing libxml2-2.11.4-h0d562d8_0 ==> libxml2-2.11.5-h232c23b_1 Changing libprotobuf-3.21.12-h3eb15da_0 ==> libprotobuf-4.23.3-hd1fb520_0 Changing scipy-1.11.1-py310ha4c1d20_0 ==> scipy-1.11.2-py310ha4c1d20_0 Linking ml_dtypes-0.2.0-py310h7cbd5c2_1 Changing libtiff-4.5.1-h8b53f26_0 ==> libtiff-4.5.1-h8b53f26_1 Changing zstandard-0.19.0-py310h1275a96_2 ==> zstandard-0.19.0-py310h5764c6d_0 Changing nodejs-18.16.1-hf52ce11_0 ==> nodejs-20.5.1-hb753e55_1 Changing krb5-1.21.1-h659d440_0 ==> krb5-1.21.2-h659d440_0 Changing cryptography-41.0.2-py310h75e40e8_0 ==> cryptography-41.0.3-py310h75e40e8_0 Changing libhwloc-2.9.1-nocuda_h7313eea_6 ==> libhwloc-2.9.2-default_h554bfaf_1009 Changing libgrpc-1.51.1-h4fad500_1 ==> libgrpc-1.56.2-h3905398_1 Changing libcurl-8.1.2-hca28451_1 ==> libcurl-8.2.1-hca28451_0 Changing tbb-2021.9.0-hf52228f_0 ==> tbb-2021.10.0-h00ab1b0_0 Changing jaxlib-0.3.25-cpu_py310hdc47304_1 ==> jaxlib-0.4.14-cpu_py310h46886e1_1 Changing curl-8.1.2-hca28451_1 ==> curl-8.2.1-hca28451_0 Changing git-2.41.0-pl5321h86e50cf_0 ==> git-2.42.0-pl5321h86e50cf_0 Changing async-timeout-4.0.2-pyhd8ed1ab_0 ==> async-timeout-4.0.3-pyhd8ed1ab_0 Changing botocore-1.29.161-pyhd8ed1ab_0 ==> botocore-1.31.17-pyhd8ed1ab_3 Changing certifi-2023.5.7-pyhd8ed1ab_0 ==> certifi-2023.7.22-pyhd8ed1ab_0 Changing configargparse-1.5.5-pyhd8ed1ab_0 ==> configargparse-1.7-pyhd8ed1ab_0 Changing exceptiongroup-1.1.2-pyhd8ed1ab_0 ==> exceptiongroup-1.1.3-pyhd8ed1ab_0 Changing google-api-python-client-2.93.0-pyhd8ed1ab_0 ==> google-api-python-client-2.97.0-pyhd8ed1ab_0 Linking importlib_metadata-6.8.0-hd8ed1ab_0 Changing importlib_resources-6.0.0-pyhd8ed1ab_1 ==> importlib_resources-6.0.1-pyhd8ed1ab_0 Changing platformdirs-3.9.1-pyhd8ed1ab_0 ==> platformdirs-3.10.0-pyhd8ed1ab_0 Changing pluggy-1.2.0-pyhd8ed1ab_0 ==> pluggy-1.3.0-pyhd8ed1ab_0 Changing pygments-2.15.1-pyhd8ed1ab_0 ==> pygments-2.16.1-pyhd8ed1ab_0 Changing pyjwt-2.7.0-pyhd8ed1ab_0 ==> pyjwt-2.8.0-pyhd8ed1ab_0 Changing pyparsing-3.1.0-pyhd8ed1ab_0 ==> pyparsing-3.1.1-pyhd8ed1ab_0 Changing python-fastjsonschema-2.17.1-pyhd8ed1ab_0 ==> python-fastjsonschema-2.18.0-pyhd8ed1ab_0 Changing setuptools-68.0.0-pyhd8ed1ab_0 ==> setuptools-68.1.2-pyhd8ed1ab_0 Changing throttler-1.2.1-pyhd8ed1ab_0 ==> throttler-1.2.2-pyhd8ed1ab_0 Changing tqdm-4.65.0-pyhd8ed1ab_1 ==> tqdm-4.66.1-pyhd8ed1ab_0 Changing ubiquerg-0.6.2-pyhd8ed1ab_0 ==> ubiquerg-0.6.3-pyhd8ed1ab_0 Changing wheel-0.40.0-pyhd8ed1ab_1 ==> wheel-0.41.2-pyhd8ed1ab_0 Changing paramiko-3.2.0-pyhd8ed1ab_0 ==> paramiko-3.3.1-pyhd8ed1ab_0 Changing s3transfer-0.6.1-pyhd8ed1ab_0 ==> s3transfer-0.6.2-pyhd8ed1ab_0 Changing jax-0.3.25-pyhd8ed1ab_0 ==> jax-0.4.14-pyhd8ed1ab_1 Changing rich-13.4.2-pyhd8ed1ab_0 ==> rich-13.5.1-pyhd8ed1ab_0 Changing nbformat-5.9.1-pyhd8ed1ab_0 ==> nbformat-5.9.2-pyhd8ed1ab_0 Changing pip-23.2-pyhd8ed1ab_0 ==> pip-23.2.1-pyhd8ed1ab_0 Changing boto3-1.26.161-pyhd8ed1ab_0 ==> boto3-1.28.17-pyhd8ed1ab_0 Changing numpyro-0.9.2-pyhd8ed1ab_0 ==> numpyro-0.12.1-pyhd8ed1ab_0 Changing jaxopt-0.7-pyhd8ed1ab_0 ==> jaxopt-0.8-pyhd8ed1ab_0 Changing peppy-0.35.6-pyhd8ed1ab_0 ==> peppy-0.35.7-pyhd8ed1ab_0 Linking eido-0.2.1-pyhd8ed1ab_0 Changing csvtk-0.26.0-h9ee0642_0 ==> csvtk-0.27.2-h9ee0642_0 Changing iqtree-2.2.2.7-h21ec9f0_2 ==> iqtree-2.2.3-h21ec9f0_0 Changing seqkit-2.5.0-h9ee0642_0 ==> seqkit-2.5.1-h9ee0642_0 Changing bx-python-0.9.0-py310h1ae98be_2 ==> bx-python-0.10.0-py310h551a815_0 Changing auspice-2.46.0-hdbdd923_2 ==> auspice-2.47.0-hdbdd923_0 Changing aiohttp-3.8.4-py310h2372a71_1 ==> aiohttp-3.8.5-py310h2372a71_0 Changing protobuf-4.21.12-py310heca2aa9_0 ==> protobuf-4.23.3-py310hb875b13_0 Changing grpcio-1.51.1-py310h4a5735c_1 ==> grpcio-1.56.2-py310h1b8f574_1 Changing awscli-1.27.161-py310hff52083_0 ==> awscli-1.29.17-py310hff52083_0 Changing snakemake-minimal-7.30.1-pyhdfd78af_0 ==> snakemake-minimal-7.32.3-pyhdfd78af_0 Changing nextstrain-cli-7.1.0-pyhdfd78af_0 ==> nextstrain-cli-7.2.0-pyhdfd78af_0 Changing evofr-0.1.20-pyhdfd78af_0 ==> evofr-0.1.20-pyhdfd78af_1 Changing augur-22.1.0-pyhdfd78af_0 ==> augur-22.4.0-pyhdfd78af_0 Changing snakemake-7.30.1-hdfd78af_0 ==> snakemake-7.32.3-hdfd78af_0 Changing aiobotocore-2.5.2-pyhd8ed1ab_0 ==> aiobotocore-2.5.4-pyhd8ed1ab_0 Changing googleapis-common-protos-1.59.1-pyhd8ed1ab_0 ==> googleapis-common-protos-1.60.0-pyhd8ed1ab_0 Changing nextstrain-base-20230717T174555Z-hb0f4dca_0_locked ==> nextstrain-base-20230830T164409Z-hb0f4dca_0_locked Transaction finished Cleaning up… __ __ ______ ___ ____ _____ ___ / /_ ____ _ / / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/ / /_/ / / / / / / /_/ / / / / / / /_/ / /_/ / / .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/ /_/ Collect information.. Cleaning index cache.. Cleaning lock files.. Package file Size ───────────────────────────────────────────────────────────────────── /tmp/tmp.yDsm6IreKo/runtimes/conda/micromamba/pkgs ───────────────────────────────────────────────────────────────────── aiobotocore-2.5.4-pyhd8ed1ab_0.conda 64kB aiohttp-3.8.5-py310h2372a71_0.conda 454kB async-timeout-4.0.3-pyhd8ed1ab_0.conda 11kB augur-22.4.0-pyhdfd78af_0.tar.bz2 190kB auspice-2.47.0-hdbdd923_0.tar.bz2 38MB awscli-1.29.17-py310hff52083_0.conda 2MB bash-5.2.15-h7f99829_1.conda 2MB boto3-1.28.17-pyhd8ed1ab_0.conda 78kB botocore-1.31.17-pyhd8ed1ab_3.conda 6MB bx-python-0.10.0-py310h551a815_0.tar.bz2 1MB ca-certificates-2023.7.22-hbcca054_0.conda 150kB certifi-2023.7.22-pyhd8ed1ab_0.conda 154kB configargparse-1.7-pyhd8ed1ab_0.conda 39kB cryptography-41.0.3-py310h75e40e8_0.conda 2MB csvtk-0.27.2-h9ee0642_0.tar.bz2 8MB curl-8.2.1-hca28451_0.conda 90kB cvxopt-1.3.2-py310h14a12bf_0.conda 505kB eido-0.2.1-pyhd8ed1ab_0.conda 20kB evofr-0.1.20-pyhdfd78af_1.tar.bz2 60kB exceptiongroup-1.1.3-pyhd8ed1ab_0.conda 19kB fonttools-4.42.1-py310h2372a71_0.conda 2MB git-2.42.0-pl5321h86e50cf_0.conda 10MB google-api-python-client-2.97.0-pyhd8ed1ab_0.conda 6MB googleapis-common-protos-1.60.0-pyhd8ed1ab_0.conda 121kB grpcio-1.56.2-py310h1b8f574_1.conda 765kB icu-73.2-h59595ed_0.conda 12MB importlib_metadata-6.8.0-hd8ed1ab_0.conda 9kB importlib_resources-6.0.1-pyhd8ed1ab_0.conda 31kB iqtree-2.2.3-h21ec9f0_0.tar.bz2 8MB jax-0.4.14-pyhd8ed1ab_1.conda 1MB jaxlib-0.4.14-cpu_py310h46886e1_1.conda 47MB jaxopt-0.8-pyhd8ed1ab_0.conda 99kB kiwisolver-1.4.5-py310hd41b1e2_0.conda 73kB krb5-1.21.2-h659d440_0.conda 1MB libabseil-20230125.3-cxx17_h59595ed_0.conda 1MB libcurl-8.2.1-hca28451_0.conda 373kB libgrpc-1.56.2-h3905398_1.conda 6MB libhwloc-2.9.2-default_h554bfaf_1009.conda 3MB libprotobuf-4.23.3-hd1fb520_0.conda 3MB libsqlite-3.43.0-h2797004_0.conda 841kB libtiff-4.5.1-h8b53f26_1.conda 417kB libuv-1.44.2-hd590300_1.conda 824kB libxml2-2.11.5-h232c23b_1.conda 706kB metis-5.1.1-h59595ed_1.conda 4MB ml_dtypes-0.2.0-py310h7cbd5c2_1.conda 691kB nbformat-5.9.2-pyhd8ed1ab_0.conda 100kB ncbi-datasets-cli-15.13.1-ha770c72_0.conda 12MB nextstrain-base-20230830T164409Z-hb0f4dca_0_locked.conda 12kB nextstrain-cli-7.2.0-pyhdfd78af_0.tar.bz2 115kB nodejs-20.5.1-hb753e55_1.conda 17MB numpy-1.25.2-py310ha4c1d20_0.conda 7MB numpyro-0.12.1-pyhd8ed1ab_0.conda 223kB openssl-3.1.2-hd590300_0.conda 3MB paramiko-3.3.1-pyhd8ed1ab_0.conda 159kB peppy-0.35.7-pyhd8ed1ab_0.conda 33kB pip-23.2.1-pyhd8ed1ab_0.conda 1MB platformdirs-3.10.0-pyhd8ed1ab_0.conda 20kB pluggy-1.3.0-pyhd8ed1ab_0.conda 23kB protobuf-4.23.3-py310hb875b13_0.conda 326kB pygments-2.16.1-pyhd8ed1ab_0.conda 853kB pyjwt-2.8.0-pyhd8ed1ab_0.conda 25kB pyparsing-3.1.1-pyhd8ed1ab_0.conda 90kB python-fastjsonschema-2.18.0-pyhd8ed1ab_0.conda 226kB python-isal-1.2.0-py310h2372a71_0.conda 49kB pyyaml-6.0.1-py310h2372a71_0.conda 171kB re2-2023.03.02-h8c504da_0.conda 201kB rich-13.5.1-pyhd8ed1ab_0.conda 184kB s3transfer-0.6.2-pyhd8ed1ab_0.conda 61kB scipy-1.11.2-py310ha4c1d20_0.conda 16MB seqkit-2.5.1-h9ee0642_0.tar.bz2 7MB setuptools-68.1.2-pyhd8ed1ab_0.conda 462kB snakemake-7.32.3-hdfd78af_0.tar.bz2 9kB snakemake-minimal-7.32.3-pyhdfd78af_0.tar.bz2 278kB tbb-2021.10.0-h00ab1b0_0.conda 186kB throttler-1.2.2-pyhd8ed1ab_0.conda 12kB tqdm-4.66.1-pyhd8ed1ab_0.conda 89kB ubiquerg-0.6.3-pyhd8ed1ab_0.conda 18kB wheel-0.41.2-pyhd8ed1ab_0.conda 57kB zstandard-0.19.0-py310h5764c6d_0.tar.bz2 671kB zstd-1.5.5-hfc55251_0.conda 545kB /tmp/tmp.yDsm6IreKo/runtimes/conda/.mamba/pkgs ───────────────────────────────────────────────────────────────────── ───────────────────────────────────────────────────────────────────── Total size: 239MB Cleaning tarballs.. Package folder Size ─────────────────────────────────────────────────────────────── /tmp/tmp.yDsm6IreKo/runtimes/conda/micromamba/pkgs ─────────────────────────────────────────────────────────────── aiobotocore-2.5.4-pyhd8ed1ab_0 290kB aiohttp-3.8.5-py310h2372a71_0 2MB async-timeout-4.0.3-pyhd8ed1ab_0 30kB augur-22.4.0-pyhdfd78af_0 898kB auspice-2.47.0-hdbdd923_0 158MB awscli-1.29.17-py310hff52083_0 12MB bash-5.2.15-h7f99829_1 10MB boto3-1.28.17-pyhd8ed1ab_0 1MB botocore-1.31.17-pyhd8ed1ab_3 86MB bx-python-0.10.0-py310h551a815_0 5MB ca-certificates-2023.7.22-hbcca054_0 296kB certifi-2023.7.22-pyhd8ed1ab_0 308kB configargparse-1.7-pyhd8ed1ab_0 179kB cryptography-41.0.3-py310h75e40e8_0 10MB csvtk-0.27.2-h9ee0642_0 21MB curl-8.2.1-hca28451_0 253kB cvxopt-1.3.2-py310h14a12bf_0 2MB eido-0.2.1-pyhd8ed1ab_0 65kB evofr-0.1.20-pyhdfd78af_1 290kB exceptiongroup-1.1.3-pyhd8ed1ab_0 68kB fonttools-4.42.1-py310h2372a71_0 14MB git-2.42.0-pl5321h86e50cf_0 56MB google-api-python-client-2.97.0-pyhd8ed1ab_0 88MB googleapis-common-protos-1.60.0-pyhd8ed1ab_0 688kB grpcio-1.56.2-py310h1b8f574_1 3MB icu-73.2-h59595ed_0 46MB importlib_metadata-6.8.0-hd8ed1ab_0 24kB importlib_resources-6.0.1-pyhd8ed1ab_0 128kB iqtree-2.2.3-h21ec9f0_0 22MB jax-0.4.14-pyhd8ed1ab_1 6MB jaxlib-0.4.14-cpu_py310h46886e1_1 229MB jaxopt-0.8-pyhd8ed1ab_0 577kB kiwisolver-1.4.5-py310hd41b1e2_0 247kB krb5-1.21.2-h659d440_0 6MB libabseil-20230125.3-cxx17_h59595ed_0 7MB libcurl-8.2.1-hca28451_0 1MB libgrpc-1.56.2-h3905398_1 28MB libhwloc-2.9.2-default_h554bfaf_1009 5MB libprotobuf-4.23.3-hd1fb520_0 12MB libsqlite-3.43.0-h2797004_0 2MB libtiff-4.5.1-h8b53f26_1 1MB libuv-1.44.2-hd590300_1 3MB libxml2-2.11.5-h232c23b_1 2MB metis-5.1.1-h59595ed_1 13MB ml_dtypes-0.2.0-py310h7cbd5c2_1 5MB nbformat-5.9.2-pyhd8ed1ab_0 568kB ncbi-datasets-cli-15.13.1-ha770c72_0 29MB nextstrain-base-20230830T164409Z-hb0f4dca_0_locked 57kB nextstrain-cli-7.2.0-pyhdfd78af_0 471kB nodejs-20.5.1-hb753e55_1 78MB numpy-1.25.2-py310ha4c1d20_0 33MB numpyro-0.12.1-pyhd8ed1ab_0 1MB openssl-3.1.2-hd590300_0 10MB paramiko-3.3.1-pyhd8ed1ab_0 835kB peppy-0.35.7-pyhd8ed1ab_0 139kB pip-23.2.1-pyhd8ed1ab_0 7MB platformdirs-3.10.0-pyhd8ed1ab_0 97kB pluggy-1.3.0-pyhd8ed1ab_0 82kB protobuf-4.23.3-py310hb875b13_0 2MB pygments-2.16.1-pyhd8ed1ab_0 4MB pyjwt-2.8.0-pyhd8ed1ab_0 99kB pyparsing-3.1.1-pyhd8ed1ab_0 416kB python-fastjsonschema-2.18.0-pyhd8ed1ab_0 5MB python-isal-1.2.0-py310h2372a71_0 185kB pyyaml-6.0.1-py310h2372a71_0 651kB re2-2023.03.02-h8c504da_0 587kB rich-13.5.1-pyhd8ed1ab_0 986kB s3transfer-0.6.2-pyhd8ed1ab_0 327kB scipy-1.11.2-py310ha4c1d20_0 63MB seqkit-2.5.1-h9ee0642_0 18MB setuptools-68.1.2-pyhd8ed1ab_0 3MB snakemake-7.32.3-hdfd78af_0 26kB snakemake-minimal-7.32.3-pyhdfd78af_0 2MB tbb-2021.10.0-h00ab1b0_0 660kB throttler-1.2.2-pyhd8ed1ab_0 36kB tqdm-4.66.1-pyhd8ed1ab_0 379kB ubiquerg-0.6.3-pyhd8ed1ab_0 52kB wheel-0.41.2-pyhd8ed1ab_0 227kB zstandard-0.19.0-py310h5764c6d_0 2MB zstd-1.5.5-hfc55251_0 2MB /tmp/tmp.yDsm6IreKo/runtimes/conda/.mamba/pkgs ─────────────────────────────────────────────────────────────── ─────────────────────────────────────────────────────────────── Total size: 1GB Cleaning packages.. warning libmamba This does not check for packages installed using symlinks back to the package cache. Runtime updated! tom@whunk tmp.yDsm6IreKo (v) (py:3.7.17) $ NEXTSTRAIN_HOME="$PWD" nextstrain version --verbose nextstrain.cli 7.2.0 Python /tmp/tmp.yDsm6IreKo/.venv/bin/python3 3.7.17 (default, Aug 30 2023, 09:59:09) [GCC 7.5.0] Runners docker nextstrain/base not present conda (default) nextstrain-base 20230830T164409Z (hb0f4dca_0_locked, nextstrain) augur 22.4.0 auspice 2.47.0 singularity docker://nextstrain/base (not present) ambient unknown aws-batch unknown